TF_ChIP-seq_ENCSR590CNM
TF_ChIP-seq ENCSR590CNM [biosample_summary="Homo sapiens HepG2" and target="GATA4"]
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| Id: | TF_ChIP-seq/ENCSR590CNM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR590CNM [biosamplesummary="Homo sapiens HepG2" and target="GATA4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN281DWZ|/analyses/ENCAN281DWZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN281DWZ|/analyses/ENCAN281DWZ/} has in progress subobject document {65f83d1a-916f-4cff-b3c6-80034649f646|/documents/65f83d1a-916f-4cff-b3c6-80034649f646/} audit_warning: Processed alignments file {ENCFF889XOV|/files/ENCFF889XOV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17808026 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GATA4-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF154VTV|/files/ENCFF154VTV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.31 and a self consistency ratio of 4.10. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR590CNM | float |
TF_ChIP-seq_ENCSR590CNM |
TF_ChIP-seq ENCSR590CNM [biosample_summary="Homo sapiens HepG2" and target="GATA4"]
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[5.44, 508] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF154VTV.bed.gz | 227.45 KB | 6cebe45aa878554fb7a6be865c051c0e |
| ENCFF154VTV.bed.gz.dvc | 100.0 B | a1785260fef7b8f839a51fa57c888d53 |
| ENCFF154VTV.tabix.bed.gz | 177.02 KB | b3e7996182d7358925014653359fa4ad |
| ENCFF154VTV.tabix.bed.gz.dvc | 106.0 B | f542540dc052fbab1c54ab73de6eab30 |
| ENCFF154VTV.tabix.bed.gz.tbi | 90.1 KB | c4ff7bda81cb9e490ff0a6a2ab262418 |
| ENCFF154VTV.tabix.bed.gz.tbi.dvc | 109.0 B | bb1f9759f6893e49fddd25d2381441fd |
| genomic_resource.yaml | 2.6 KB | c692b0f1d7477a17a9a54b9782ad3aeb |
| genomic_resource_original.yaml | 2.51 KB | cfb7c6ff712f0ff7433313015160b37d |
| statistics/ |