TF_ChIP-seq_ENCSR590BHJ
TF_ChIP-seq ENCSR590BHJ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF275" and target="ZNF275"]
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| Id: | TF_ChIP-seq/ENCSR590BHJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR590BHJ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF275" and target="ZNF275"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF275 output_type: IDR thresholded peaks audit_internal_action: File {ENCFF776STO|/files/ENCFF776STO/} with status 'released' is derived from file {ENCFF399LFU|/files/ENCFF399LFU/} with status 'in progress'. audit_internal_action: Released analysis {ENCAN488DIJ|/analyses/ENCAN488DIJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF884EMT|/files/ENCFF884EMT/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF884EMT|/files/ENCFF884EMT/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.53. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF675EDW|/files/ENCFF675EDW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF675EDW|/files/ENCFF675EDW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.26. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF776STO|/files/ENCFF776STO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.31 and a self consistency ratio of 3.48. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR590BHJ | float |
TF_ChIP-seq_ENCSR590BHJ |
TF_ChIP-seq ENCSR590BHJ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF275" and target="ZNF275"]
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[9.19, 456] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF776STO.bed.gz | 217.79 KB | ab8d17a3a78f6454d807ebacb602661a |
| ENCFF776STO.bed.gz.dvc | 100.0 B | b90449f3707e25806c91be8a067194cf |
| ENCFF776STO.tabix.bed.gz | 177.14 KB | 7d41d571ca3d141485a2a292241502db |
| ENCFF776STO.tabix.bed.gz.dvc | 106.0 B | f2721569ae81a8f872078942be1826a4 |
| ENCFF776STO.tabix.bed.gz.tbi | 75.73 KB | 3d7728b58dea22be11da2835c6459235 |
| ENCFF776STO.tabix.bed.gz.tbi.dvc | 109.0 B | cb863b95e4acc37515923b333bb98a7e |
| genomic_resource.yaml | 4.95 KB | 68a9202ca8ae8be254ffc82c7ff6f573 |
| genomic_resource_original.yaml | 4.78 KB | 6b3f7343398183c9a2e43d1aeff1a9b0 |
| statistics/ |