TF_ChIP-seq_ENCSR585JVS
TF_ChIP-seq ENCSR585JVS [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR585JVS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR585JVS [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN588UGD|/analyses/ENCAN588UGD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF767USV|/files/ENCFF767USV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF767USV|/files/ENCFF767USV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR585JVS | float |
TF_ChIP-seq_ENCSR585JVS |
TF_ChIP-seq ENCSR585JVS [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="CTCF"]
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[3.82, 396] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF228QYX.bed.gz | 742.28 KB | 4dc25c2e939ca92efcf52553b7cfe17c |
| ENCFF228QYX.bed.gz.dvc | 100.0 B | 97e31a77df33a1963cefd8891210d649 |
| ENCFF228QYX.tabix.bed.gz | 565.01 KB | f9e4e2032da60cacd4013672e708c973 |
| ENCFF228QYX.tabix.bed.gz.dvc | 106.0 B | 3c4fb1f9fb4e1559c83114677b45a907 |
| ENCFF228QYX.tabix.bed.gz.tbi | 284.08 KB | f7829d68577f63d17a23b0aa8b747534 |
| ENCFF228QYX.tabix.bed.gz.tbi.dvc | 110.0 B | 442122a029f4176de6cccc4242a45fcc |
| genomic_resource.yaml | 2.76 KB | 4052c07ec47e2f59fc1f34dcd210ecdb |
| genomic_resource_original.yaml | 2.63 KB | cbb3ab1ae65dd2ed4333a21fbda2f83d |
| statistics/ |