TF_ChIP-seq_ENCSR584DEL
TF_ChIP-seq ENCSR584DEL [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF543" and target="ZNF543"]
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| Id: | TF_ChIP-seq/ENCSR584DEL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR584DEL [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF543" and target="ZNF543"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF543 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN912TLB|/analyses/ENCAN912TLB/} has in progress subobject document {6788ac21-7a4e-45c6-bed4-760386bfa64a|/documents/6788ac21-7a4e-45c6-bed4-760386bfa64a/} audit_internal_action: Released analysis {ENCAN912TLB|/analyses/ENCAN912TLB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF888XEL|/files/ENCFF888XEL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF888XEL|/files/ENCFF888XEL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.21. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF302BWC|/files/ENCFF302BWC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF302BWC|/files/ENCFF302BWC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.12. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR584DEL | float |
TF_ChIP-seq_ENCSR584DEL |
TF_ChIP-seq ENCSR584DEL [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF543" and target="ZNF543"]
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[10.4, 772] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF141UZG.bed.gz | 334.17 KB | 2d0a5360e0adc8f9a4b2b6fdcbe78e75 |
| ENCFF141UZG.bed.gz.dvc | 100.0 B | 95a0e7494c49132c4c24e044125899d4 |
| ENCFF141UZG.tabix.bed.gz | 267.11 KB | ef0190ae17183392c6e0b1d1ac556c4b |
| ENCFF141UZG.tabix.bed.gz.dvc | 106.0 B | b57004dec9716023538ba2d9ac0e180b |
| ENCFF141UZG.tabix.bed.gz.tbi | 97.81 KB | e7cc606613ac7273e150077650006120 |
| ENCFF141UZG.tabix.bed.gz.tbi.dvc | 110.0 B | 7829c12d71faa27ac9be76acb548d0e1 |
| genomic_resource.yaml | 4.45 KB | cec16c1c7f117b66284197ad5f75fe7b |
| genomic_resource_original.yaml | 4.29 KB | f9fb63c47b71de89219bb27e0aee0b0b |
| statistics/ |