TF_ChIP-seq_ENCSR582EIB
TF_ChIP-seq ENCSR582EIB [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF830" and target="ZNF830"]
×
| Id: | TF_ChIP-seq/ENCSR582EIB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR582EIB [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF830" and target="ZNF830"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF830 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN783PZN|/analyses/ENCAN783PZN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF503DQU|/files/ENCFF503DQU/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF503DQU|/files/ENCFF503DQU/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.98. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR582EIB | float |
TF_ChIP-seq_ENCSR582EIB |
TF_ChIP-seq ENCSR582EIB [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF830" and target="ZNF830"]
|
|
[15.4, 618] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF150ZBY.bed.gz | 77.8 KB | 05b26fc4a3c95b5924206dd9a84f65f3 |
| ENCFF150ZBY.bed.gz.dvc | 99.0 B | d92b5177035b4b236370bb8f9e82f1a5 |
| ENCFF150ZBY.tabix.bed.gz | 52.35 KB | 93e21dbd2925d1e138c3843c39f3f304 |
| ENCFF150ZBY.tabix.bed.gz.dvc | 105.0 B | 6f929563bce8e2f4663eee566f39b784 |
| ENCFF150ZBY.tabix.bed.gz.tbi | 34.93 KB | 143f9a193ec7affb558c0b07fc0687af |
| ENCFF150ZBY.tabix.bed.gz.tbi.dvc | 109.0 B | 194aefeb6dde86e10cb1458542dee153 |
| genomic_resource.yaml | 2.97 KB | c85e8d08b2f4a1a6fc32ce3aae4604b8 |
| genomic_resource_original.yaml | 2.8 KB | 2354be94c7f200e1520925380ca6f4c6 |
| statistics/ |