TF_ChIP-seq_ENCSR579YNY
TF_ChIP-seq ENCSR579YNY [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40" and target="ZBTB40"]
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| Id: | TF_ChIP-seq/ENCSR579YNY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR579YNY [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40" and target="ZBTB40"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN334JLF|/analyses/ENCAN334JLF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF484UZA|/files/ENCFF484UZA/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF484UZA|/files/ENCFF484UZA/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.39. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF165IUL|/files/ENCFF165IUL/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF165IUL|/files/ENCFF165IUL/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.98. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR579YNY | float |
TF_ChIP-seq_ENCSR579YNY |
TF_ChIP-seq ENCSR579YNY [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40" and target="ZBTB40"]
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[8.52, 841] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF132DPY.bed.gz | 92.39 KB | 90e0215e2c43ed94902b93d6eb4ade9b |
| ENCFF132DPY.bed.gz.dvc | 99.0 B | befd3efdd33649f5200ab949370fe691 |
| ENCFF132DPY.tabix.bed.gz | 64.43 KB | 548ee28561fda055076398e8ffd1cdf7 |
| ENCFF132DPY.tabix.bed.gz.dvc | 105.0 B | b83b65fa36afe33d48d18f65dbbb24d1 |
| ENCFF132DPY.tabix.bed.gz.tbi | 43.98 KB | 9a291433227cc1c8620fea49d4d2f083 |
| ENCFF132DPY.tabix.bed.gz.tbi.dvc | 109.0 B | ee8e934dae07941500aa3fb2fee7eb66 |
| genomic_resource.yaml | 4.24 KB | 90a230d7a13eefbbeb9ea7d9d5b5e68f |
| genomic_resource_original.yaml | 4.07 KB | 35a8ffefd8d4fcf4106fa814ed69349e |
| statistics/ |