TF_ChIP-seq_ENCSR579RFH
TF_ChIP-seq ENCSR579RFH [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD3" and target="SMAD3"]
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| Id: | TF_ChIP-seq/ENCSR579RFH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR579RFH [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD3" and target="SMAD3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SMAD3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN533GSO|/analyses/ENCAN533GSO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF331PMP|/files/ENCFF331PMP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF331PMP|/files/ENCFF331PMP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.73. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF770SCA|/files/ENCFF770SCA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF770SCA|/files/ENCFF770SCA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.15. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF580MYL|/files/ENCFF580MYL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.17 and a self consistency ratio of 2.11. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR579RFH | float |
TF_ChIP-seq_ENCSR579RFH |
TF_ChIP-seq ENCSR579RFH [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD3" and target="SMAD3"]
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[9.54, 438] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF580MYL.bed.gz | 129.66 KB | 70ff80d202f8adba982a84f49395d442 |
| ENCFF580MYL.bed.gz.dvc | 100.0 B | 4de267ad1aa1b2f7078dc9102d10f9e3 |
| ENCFF580MYL.tabix.bed.gz | 89.59 KB | c516d01bdd52b9920feec5392020dbf0 |
| ENCFF580MYL.tabix.bed.gz.dvc | 105.0 B | d26082cb52f890b3ddf52ddcfafbf03e |
| ENCFF580MYL.tabix.bed.gz.tbi | 59.74 KB | c6b26ace08fff8e9d22d408e845cc7ce |
| ENCFF580MYL.tabix.bed.gz.tbi.dvc | 109.0 B | cecde07a1e89bd22b570cf489c9496d4 |
| genomic_resource.yaml | 4.75 KB | 61716850d5d94d127a0d22b80b052266 |
| genomic_resource_original.yaml | 4.59 KB | 30099ef0d9119534df0dab48dca25b0b |
| statistics/ |