| Id: | TF_ChIP-seq/ENCSR574YRZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR574YRZ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN12" and target="ZSCAN12"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN12 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN907HCM|/analyses/ENCAN907HCM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF015MZK|/files/ENCFF015MZK/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF015MZK|/files/ENCFF015MZK/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 4.87. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR574YRZ | float |
TF_ChIP-seq_ENCSR574YRZ |
TF_ChIP-seq ENCSR574YRZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN12" and target="ZSCAN12"]
|
 |
[7.94, 470] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF594DAV.bed.gz | 125.2 KB | 902d1014808f3b38278c7f299aea8614 |
| ENCFF594DAV.bed.gz.dvc | 100.0 B | 779b14de6400a9329e894cce33143c1d |
| ENCFF594DAV.tabix.bed.gz | 86.43 KB | 5955f0c34fb847caff6d30be20e7376c |
| ENCFF594DAV.tabix.bed.gz.dvc | 105.0 B | b131ad42f86849494c07c2742aa98f10 |
| ENCFF594DAV.tabix.bed.gz.tbi | 53.09 KB | aa6c6250d5b77ad66e60055902af8951 |
| ENCFF594DAV.tabix.bed.gz.tbi.dvc | 109.0 B | 1fd42ce3478b2a8e97180314aeb3dd30 |
| genomic_resource.yaml | 2.98 KB | 2d0c58ad5cc873d8394dff1db15be0b9 |
| genomic_resource_original.yaml | 2.81 KB | 7ce1438c5fec2a5c4e2e2878a3ededd3 |
| statistics/ |