TF_ChIP-seq_ENCSR574UJE
TF_ChIP-seq ENCSR574UJE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF485" and target="ZNF485"]
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| Id: | TF_ChIP-seq/ENCSR574UJE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR574UJE [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF485" and target="ZNF485"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF485 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN701YBV|/analyses/ENCAN701YBV/} has in progress subobject document {9d9562b5-82b3-490b-b79d-07da865ab621|/documents/9d9562b5-82b3-490b-b79d-07da865ab621/} audit_internal_action: Released analysis {ENCAN701YBV|/analyses/ENCAN701YBV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF706XIN|/files/ENCFF706XIN/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF706XIN|/files/ENCFF706XIN/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.15. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF535XZM|/files/ENCFF535XZM/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF535XZM|/files/ENCFF535XZM/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.37. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF837BSM|/files/ENCFF837BSM/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.30 and a self consistency ratio of 2.99. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF360UPH|/files/ENCFF360UPH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.30 and a self consistency ratio of 2.99. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR574UJE | float |
TF_ChIP-seq_ENCSR574UJE |
TF_ChIP-seq ENCSR574UJE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF485" and target="ZNF485"]
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[12.9, 415] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF837BSM.bed.gz | 172.03 KB | 5d3e1a44ffac1c4150de924f2873b997 |
| ENCFF837BSM.bed.gz.dvc | 100.0 B | 83ecb592a61da105c32c55ac3903f8c4 |
| ENCFF837BSM.tabix.bed.gz | 123.4 KB | 0ebcc179d6198c6024e2a548d4e40419 |
| ENCFF837BSM.tabix.bed.gz.dvc | 106.0 B | 30788f8258edb2184b7c4b7341cf3460 |
| ENCFF837BSM.tabix.bed.gz.tbi | 64.02 KB | e978348086074c82778af854248e81d2 |
| ENCFF837BSM.tabix.bed.gz.tbi.dvc | 109.0 B | 258aa8529d02b0b37af49fe4c28b8e8b |
| genomic_resource.yaml | 5.49 KB | cb80da45700f026c30b4f16349edc8aa |
| genomic_resource_original.yaml | 5.33 KB | 675531f45d716cc4bb2041c7f73c627c |
| statistics/ |