TF_ChIP-seq_ENCSR569SZK
TF_ChIP-seq ENCSR569SZK [biosample_summary="Homo sapiens tibial nerve tissue female adult (51 years)" and target="EP300"]
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| Id: | TF_ChIP-seq/ENCSR569SZK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR569SZK [biosamplesummary="Homo sapiens tibial nerve tissue female adult (51 years)" and target="EP300"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN436KLQ|/analyses/ENCAN436KLQ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF848EEE|/files/ENCFF848EEE/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF489UTO|/files/ENCFF489UTO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF489UTO|/files/ENCFF489UTO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.25. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR569SZK | float |
TF_ChIP-seq_ENCSR569SZK |
TF_ChIP-seq ENCSR569SZK [biosample_summary="Homo sapiens tibial nerve tissue female adult (51 years)" and target="EP300"]
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[7.04, 528] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF848EEE.bed.gz | 326.08 KB | 8e37167c162cc8b0e14b243a626c5360 |
| ENCFF848EEE.bed.gz.dvc | 100.0 B | 296f997831996c7aba58094c80d36be3 |
| ENCFF848EEE.tabix.bed.gz | 241.65 KB | 9b25ec42ef8df32e7108cf50a22f06d3 |
| ENCFF848EEE.tabix.bed.gz.dvc | 106.0 B | 0ab7a372d013222b8407ecb12d03dbb4 |
| ENCFF848EEE.tabix.bed.gz.tbi | 124.41 KB | b2b772b0b0b6cc3a57259143f05801d2 |
| ENCFF848EEE.tabix.bed.gz.tbi.dvc | 110.0 B | 4f49c56775b8187041a83f709e4a556a |
| genomic_resource.yaml | 2.93 KB | bef60a2a25186d5ca737e99d14de4135 |
| genomic_resource_original.yaml | 2.8 KB | 0a5fe55e4d1eb1bcf2f044954e0b306d |
| statistics/ |