TF_ChIP-seq_ENCSR569GKR
TF_ChIP-seq ENCSR569GKR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF253" and target="ZNF253"]
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| Id: | TF_ChIP-seq/ENCSR569GKR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR569GKR [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF253" and target="ZNF253"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF253 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN752CZH|/analyses/ENCAN752CZH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF124ZHH|/files/ENCFF124ZHH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF124ZHH|/files/ENCFF124ZHH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.03. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF528NWL|/files/ENCFF528NWL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF528NWL|/files/ENCFF528NWL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.90. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF996NWM|/files/ENCFF996NWM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.78 and a self consistency ratio of 3.04. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR569GKR | float |
TF_ChIP-seq_ENCSR569GKR |
TF_ChIP-seq ENCSR569GKR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF253" and target="ZNF253"]
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[11.8, 446] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF996NWM.bed.gz | 132.11 KB | f97e55dc368ae93a3cfea2faddd287c3 |
| ENCFF996NWM.bed.gz.dvc | 100.0 B | c7cfbe1958ece4ca4fd38d8f9ba9e1de |
| ENCFF996NWM.tabix.bed.gz | 96.34 KB | e65860b1e0da86b0728abe043a113477 |
| ENCFF996NWM.tabix.bed.gz.dvc | 105.0 B | 0237177de43bf2cec449e7319a110df5 |
| ENCFF996NWM.tabix.bed.gz.tbi | 53.34 KB | 99cea8925dddbee67777f998c7251eec |
| ENCFF996NWM.tabix.bed.gz.tbi.dvc | 109.0 B | c99fc8cc4fdf1b49b6f42af864751392 |
| genomic_resource.yaml | 4.76 KB | 4cd2b01e3437167abe0ae427b89f8ec2 |
| genomic_resource_original.yaml | 4.59 KB | 17ff37dce31fdbab1b72ec24e83b50f0 |
| statistics/ |