TF_ChIP-seq_ENCSR567IOQ
TF_ChIP-seq ENCSR567IOQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GLMP" and target="GLMP"]
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| Id: | TF_ChIP-seq/ENCSR567IOQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR567IOQ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GLMP" and target="GLMP"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens GLMP output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN987EJJ|/analyses/ENCAN987EJJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF012CPJ|/files/ENCFF012CPJ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF012CPJ|/files/ENCFF012CPJ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.69. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF687CMM|/files/ENCFF687CMM/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF687CMM|/files/ENCFF687CMM/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.41. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF745JFN|/files/ENCFF745JFN/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline have a rescue ratio of 1.44 and a self consistency ratio of 5.84. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR567IOQ | float |
TF_ChIP-seq_ENCSR567IOQ |
TF_ChIP-seq ENCSR567IOQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GLMP" and target="GLMP"]
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[7.89, 451] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF745JFN.bed.gz | 21.22 KB | 30e522c739d2c0df184f9f46d7174e6c |
| ENCFF745JFN.bed.gz.dvc | 99.0 B | ec525abe55c21ecb73188a0b45336932 |
| ENCFF745JFN.tabix.bed.gz | 15.29 KB | 6f5261cc26d5f656cecee641716f2616 |
| ENCFF745JFN.tabix.bed.gz.dvc | 105.0 B | af691a64fd4c37cfd9a093193fcfb867 |
| ENCFF745JFN.tabix.bed.gz.tbi | 13.71 KB | e37c77c756386d5c157bb4d99ed812ac |
| ENCFF745JFN.tabix.bed.gz.tbi.dvc | 109.0 B | 1bef8dd912068772067fcba840ebf003 |
| genomic_resource.yaml | 4.74 KB | 0025b72a6a04024d83e0ae812bba7a46 |
| genomic_resource_original.yaml | 4.58 KB | 1b55c71bfa5c328fe754ee3b209108f3 |
| statistics/ |