TF_ChIP-seq_ENCSR563LLO
TF_ChIP-seq ENCSR563LLO [biosample_summary="Homo sapiens K562" and target="E2F1"]
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| Id: | TF_ChIP-seq/ENCSR563LLO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR563LLO [biosamplesummary="Homo sapiens K562" and target="E2F1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN450CLJ|/analyses/ENCAN450CLJ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF445VTT|/files/ENCFF445VTT/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF846CYU|/files/ENCFF846CYU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12695329 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting E2F1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF226KOW|/files/ENCFF226KOW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19649320 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting E2F1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF846CYU|/files/ENCFF846CYU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF846CYU|/files/ENCFF846CYU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.15. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF226KOW|/files/ENCFF226KOW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF226KOW|/files/ENCFF226KOW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.28. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR563LLO | float |
TF_ChIP-seq_ENCSR563LLO |
TF_ChIP-seq ENCSR563LLO [biosample_summary="Homo sapiens K562" and target="E2F1"]
|
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[8.99, 3.76e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF445VTT.bed.gz | 163.92 KB | b3a7a5144a292cafe35edcd2c7e0439d |
| ENCFF445VTT.bed.gz.dvc | 100.0 B | e27f7ed011dd622bcb0ef6f58f2fb67c |
| ENCFF445VTT.tabix.bed.gz | 122.69 KB | e0c4519c27fc5705f88132e4ae6a1a5d |
| ENCFF445VTT.tabix.bed.gz.dvc | 106.0 B | ca79bf4660bce19ea1e409f0f38509d7 |
| ENCFF445VTT.tabix.bed.gz.tbi | 65.55 KB | 34a27fc3f905d192ec222aead9a85963 |
| ENCFF445VTT.tabix.bed.gz.tbi.dvc | 109.0 B | e399d870e57713143e88f7e22015bacd |
| genomic_resource.yaml | 5.47 KB | 35bef2ee349c611962f1d781b68bf723 |
| genomic_resource_original.yaml | 5.37 KB | 9221880e3b393cb49b0fec97e91876b7 |
| statistics/ |