TF_ChIP-seq_ENCSR561YGS
TF_ChIP-seq ENCSR561YGS [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1" and target="GABPB1"]
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| Id: | TF_ChIP-seq/ENCSR561YGS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR561YGS [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1" and target="GABPB1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN010RCC|/analyses/ENCAN010RCC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF445RDL|/files/ENCFF445RDL/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF445RDL|/files/ENCFF445RDL/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.61. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF280WDV|/files/ENCFF280WDV/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF280WDV|/files/ENCFF280WDV/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.32. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR561YGS | float |
TF_ChIP-seq_ENCSR561YGS |
TF_ChIP-seq ENCSR561YGS [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1" and target="GABPB1"]
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[9.27, 773] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF024GMY.bed.gz | 459.83 KB | a896dec9a2e7ab83669ac357be6df79d |
| ENCFF024GMY.bed.gz.dvc | 100.0 B | 56b57e919c30781b2aad16fe5d341624 |
| ENCFF024GMY.tabix.bed.gz | 339.68 KB | ea0873652ad441e354f468e8ebc1cf62 |
| ENCFF024GMY.tabix.bed.gz.dvc | 106.0 B | 3bfea38bbe84f1e4763fe36c108357b5 |
| ENCFF024GMY.tabix.bed.gz.tbi | 153.46 KB | 27978a10dffd4604288e5e326f7480da |
| ENCFF024GMY.tabix.bed.gz.tbi.dvc | 110.0 B | c968c68c4774d1652b8521d52770436f |
| genomic_resource.yaml | 4.24 KB | cb663928ef1a04e54d34f8e11c5beeb1 |
| genomic_resource_original.yaml | 4.07 KB | bcae2dd784dbb60b70a317690d54e938 |
| statistics/ |