TF_ChIP-seq_ENCSR558OMR
TF_ChIP-seq ENCSR558OMR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TFDP1" and target="TFDP1"]
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| Id: | TF_ChIP-seq/ENCSR558OMR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR558OMR [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TFDP1" and target="TFDP1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TFDP1 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN173OPB|/analyses/ENCAN173OPB/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF934CSS|/files/ENCFF934CSS/}, {ENCFF049ZOP|/files/ENCFF049ZOP/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.72 and a self consistency ratio of 5.01. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF597ALL|/files/ENCFF597ALL/}, {ENCFF240XFY|/files/ENCFF240XFY/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.72 and a self consistency ratio of 5.01. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR558OMR | float |
TF_ChIP-seq_ENCSR558OMR |
TF_ChIP-seq ENCSR558OMR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TFDP1" and target="TFDP1"]
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[9.35, 408] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF049ZOP.bed.gz | 393.07 KB | c0f260d80fd3bc1069991d44be192ff3 |
| ENCFF049ZOP.bed.gz.dvc | 100.0 B | 2230586ba94e3c577cb35a6d9a4f7334 |
| ENCFF049ZOP.tabix.bed.gz | 301.21 KB | 94442a0c7301947193edaef8db464ead |
| ENCFF049ZOP.tabix.bed.gz.dvc | 106.0 B | f7a3bfa8a05f258b000e3fd24df38034 |
| ENCFF049ZOP.tabix.bed.gz.tbi | 133.44 KB | 07be031efd31b65508e424ff3f1266da |
| ENCFF049ZOP.tabix.bed.gz.tbi.dvc | 110.0 B | 329b64340ac418499d1f776c12ecd520 |
| genomic_resource.yaml | 2.8 KB | 0d56281dcdff8fe9f06068fbbfa5b5a0 |
| genomic_resource_original.yaml | 2.64 KB | 24e53bdb076e99ad667473957d7e4d18 |
| statistics/ |