TF_ChIP-seq_ENCSR554YEH
TF_ChIP-seq ENCSR554YEH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TOE1" and target="TOE1"]
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| Id: | TF_ChIP-seq/ENCSR554YEH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR554YEH [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TOE1" and target="TOE1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TOE1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN683TWX|/analyses/ENCAN683TWX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN683TWX|/analyses/ENCAN683TWX/} has in progress subobject document {3d200ee4-d27a-4c48-b686-1f35e3d95741|/documents/3d200ee4-d27a-4c48-b686-1f35e3d95741/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF821JRP|/files/ENCFF821JRP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF821JRP|/files/ENCFF821JRP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.83. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR554YEH | float |
TF_ChIP-seq_ENCSR554YEH |
TF_ChIP-seq ENCSR554YEH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TOE1" and target="TOE1"]
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[7.15, 385] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF167IAP.bed.gz | 122.21 KB | 89608103110e79e0b2c77321ee7a092f |
| ENCFF167IAP.bed.gz.dvc | 100.0 B | fbf4dfb704aab14e45b55dade6f353d1 |
| ENCFF167IAP.tabix.bed.gz | 91.51 KB | ffbb95c5194afa040a9e4d885f07a450 |
| ENCFF167IAP.tabix.bed.gz.dvc | 105.0 B | a363ba1817453c62101c3a720d99af1d |
| ENCFF167IAP.tabix.bed.gz.tbi | 52.43 KB | d184167f4f9e46d24ede1063859c2455 |
| ENCFF167IAP.tabix.bed.gz.tbi.dvc | 109.0 B | eb1a18697599cc345c28e9de7cbc8b13 |
| genomic_resource.yaml | 3.17 KB | 8280a27a5ac1f2b7305ae9a266b956fb |
| genomic_resource_original.yaml | 3.01 KB | fef4607cf8a5f7ca11de37db20a8d3aa |
| statistics/ |