TF_ChIP-seq_ENCSR553ZJQ
TF_ChIP-seq ENCSR553ZJQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF18" and target="ZNF18"]
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| Id: | TF_ChIP-seq/ENCSR553ZJQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR553ZJQ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF18" and target="ZNF18"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF18 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN456JZS|/analyses/ENCAN456JZS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_not_compliant: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF313BSI|/files/ENCFF313BSI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 2.13 and a self consistency ratio of 7.34. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF702XIC|/files/ENCFF702XIC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF702XIC|/files/ENCFF702XIC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.18. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF554KUE|/files/ENCFF554KUE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF554KUE|/files/ENCFF554KUE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.63. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR553ZJQ | float |
TF_ChIP-seq_ENCSR553ZJQ |
TF_ChIP-seq ENCSR553ZJQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF18" and target="ZNF18"]
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[10.5, 684] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF313BSI.bed.gz | 290.11 KB | 2a4d89eabb2594b8ec5c78367a6abbcc |
| ENCFF313BSI.bed.gz.dvc | 100.0 B | c453c7b9632b76baf2b36564e17666ec |
| ENCFF313BSI.tabix.bed.gz | 234.13 KB | 815a73829f0603c9d2812c6fd46a5e6f |
| ENCFF313BSI.tabix.bed.gz.dvc | 106.0 B | 85d6d45aaa667d10dd9d6c101f93b202 |
| ENCFF313BSI.tabix.bed.gz.tbi | 87.38 KB | 44d032096ee6b7a65f40ee356a1b403f |
| ENCFF313BSI.tabix.bed.gz.tbi.dvc | 109.0 B | 7cdb9226a97af5d6b96551f2887ef944 |
| genomic_resource.yaml | 4.97 KB | 5032c16155e8cc5b9ad7751267f942d8 |
| genomic_resource_original.yaml | 4.81 KB | d35a8ca6bdf2e606908767d5379f2f68 |
| statistics/ |