TF_ChIP-seq_ENCSR552XSN
TF_ChIP-seq ENCSR552XSN [biosample_summary="Homo sapiens GM12878" and target="MLLT1"]
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| Id: | TF_ChIP-seq/ENCSR552XSN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR552XSN [biosamplesummary="Homo sapiens GM12878" and target="MLLT1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN935AAS|/analyses/ENCAN935AAS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN935AAS|/analyses/ENCAN935AAS/} has in progress subobject document {89ade305-125e-4b98-956f-8dc7bb4d6c23|/documents/89ade305-125e-4b98-956f-8dc7bb4d6c23/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF777FAN|/files/ENCFF777FAN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF777FAN|/files/ENCFF777FAN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.78. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR552XSN | float |
TF_ChIP-seq_ENCSR552XSN |
TF_ChIP-seq ENCSR552XSN [biosample_summary="Homo sapiens GM12878" and target="MLLT1"]
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[14.4, 1.83e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF652GOE.bed.gz | 801.51 KB | 1770695af7732bf82eec0104afb7e607 |
| ENCFF652GOE.bed.gz.dvc | 100.0 B | 1c7294f4989a5ebc25e5d849219796cf |
| ENCFF652GOE.tabix.bed.gz | 543.27 KB | 49bf44a075f9656e44faf4c13696e27e |
| ENCFF652GOE.tabix.bed.gz.dvc | 106.0 B | 684394a13d9ba46179deef2b4340bf0b |
| ENCFF652GOE.tabix.bed.gz.tbi | 169.12 KB | c1b3b3c571a9b267b960c2f6644e5933 |
| ENCFF652GOE.tabix.bed.gz.tbi.dvc | 110.0 B | 9bd47b3e2fd267957635bad5354aba5d |
| genomic_resource.yaml | 2.88 KB | c153e170d2231cee37236e8b8e12147e |
| genomic_resource_original.yaml | 2.78 KB | 05e2fa501c54e4f2f1f0773682f270af |
| statistics/ |