TF_ChIP-seq_ENCSR551QJT
TF_ChIP-seq ENCSR551QJT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THRA" and target="THRA"]
×
| Id: | TF_ChIP-seq/ENCSR551QJT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR551QJT [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THRA" and target="THRA"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens THRA output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN319KXL|/analyses/ENCAN319KXL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN319KXL|/analyses/ENCAN319KXL/} has in progress subobject document {8946daae-e87c-41f8-b9bd-54a40cc97cc8|/documents/8946daae-e87c-41f8-b9bd-54a40cc97cc8/} audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF737MXG|/files/ENCFF737MXG/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.30 and a self consistency ratio of 2.27. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF025KMX|/files/ENCFF025KMX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.30 and a self consistency ratio of 2.27. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR551QJT | float |
TF_ChIP-seq_ENCSR551QJT |
TF_ChIP-seq ENCSR551QJT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THRA" and target="THRA"]
|
|
[7.17, 555] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF737MXG.bed.gz | 477.98 KB | 50c975dde97a6749756d120f79be91e8 |
| ENCFF737MXG.bed.gz.dvc | 100.0 B | e63fc722bad3e01e2497281d653cc42e |
| ENCFF737MXG.tabix.bed.gz | 351.96 KB | 3536458b489121ee19aafdb0560f72b8 |
| ENCFF737MXG.tabix.bed.gz.dvc | 106.0 B | 3c3265c8ca99f08441eb247e547c5047 |
| ENCFF737MXG.tabix.bed.gz.tbi | 155.69 KB | 28d9b82a58ee377349ad10cc3a5a9bf4 |
| ENCFF737MXG.tabix.bed.gz.tbi.dvc | 110.0 B | 6b9ea9652c37714039f4e55698f2ac13 |
| genomic_resource.yaml | 2.94 KB | e6a20ac23bde7d21992dfc6c4290cdf2 |
| genomic_resource_original.yaml | 2.78 KB | ff7922fbe15df232855a40969fc76f37 |
| statistics/ |