TF_ChIP-seq_ENCSR550SCU
TF_ChIP-seq ENCSR550SCU [biosample_summary="Homo sapiens A549" and target="CHD4"]
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| Id: | TF_ChIP-seq/ENCSR550SCU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR550SCU [biosamplesummary="Homo sapiens A549" and target="CHD4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN991PSH|/analyses/ENCAN991PSH/} has in progress subobject document {307f0d10-5af3-4d7b-bb39-1fc2c32db2e9|/documents/307f0d10-5af3-4d7b-bb39-1fc2c32db2e9/} audit_internal_action: Released analysis {ENCAN991PSH|/analyses/ENCAN991PSH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF162SOZ|/files/ENCFF162SOZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF162SOZ|/files/ENCFF162SOZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.15. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF669UYG|/files/ENCFF669UYG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.49 and a self consistency ratio of 4.00. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR550SCU | float |
TF_ChIP-seq_ENCSR550SCU |
TF_ChIP-seq ENCSR550SCU [biosample_summary="Homo sapiens A549" and target="CHD4"]
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[7.5, 139] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF669UYG.bed.gz | 54.48 KB | f37d5a6dc008c1a371cc08fa2051ad22 |
| ENCFF669UYG.bed.gz.dvc | 99.0 B | d76e511216c5b78ba0584078be90b0a7 |
| ENCFF669UYG.tabix.bed.gz | 42.81 KB | eaf697389fceae4d8db5a28768c83bc7 |
| ENCFF669UYG.tabix.bed.gz.dvc | 105.0 B | 37b0e32a621974e71c5b2f29a3181aef |
| ENCFF669UYG.tabix.bed.gz.tbi | 27.94 KB | 162243a390cffb8987c67da73403a642 |
| ENCFF669UYG.tabix.bed.gz.tbi.dvc | 109.0 B | cd056b49f240f5242ee98e25e66c9e00 |
| genomic_resource.yaml | 3.4 KB | ae9993519c20d32448714f9fa3990df1 |
| genomic_resource_original.yaml | 3.31 KB | f7d8cdc6392f1ff3a9dfa755c3476b59 |
| statistics/ |