TF_ChIP-seq_ENCSR549PVK
TF_ChIP-seq ENCSR549PVK [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens PATZ1" and target="PATZ1"]
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| Id: | TF_ChIP-seq/ENCSR549PVK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR549PVK [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens PATZ1" and target="PATZ1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens PATZ1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN021FZN|/analyses/ENCAN021FZN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN021FZN|/analyses/ENCAN021FZN/} has in progress subobject document {7b4677d2-a987-4d8a-8ed5-0be04f549b73|/documents/7b4677d2-a987-4d8a-8ed5-0be04f549b73/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF231JPM|/files/ENCFF231JPM/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF231JPM|/files/ENCFF231JPM/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.49. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF809APN|/files/ENCFF809APN/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF809APN|/files/ENCFF809APN/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.83. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF743JJF|/files/ENCFF743JJF/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.23 and a self consistency ratio of 2.06. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF610CJH|/files/ENCFF610CJH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.23 and a self consistency ratio of 2.06. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR549PVK | float |
TF_ChIP-seq_ENCSR549PVK |
TF_ChIP-seq ENCSR549PVK [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens PATZ1" and target="PATZ1"]
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[14, 924] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF743JJF.bed.gz | 46.67 KB | f677ae737eaa8a167b9954a2314c0f29 |
| ENCFF743JJF.bed.gz.dvc | 99.0 B | aa5975d3bf3aab7db83dd1df2b113c9e |
| ENCFF743JJF.tabix.bed.gz | 30.82 KB | bd3c3b2d9d7e2c2087bcad825181b0f8 |
| ENCFF743JJF.tabix.bed.gz.dvc | 105.0 B | 569f72891a2fc9f522ebd8828d3a8ad7 |
| ENCFF743JJF.tabix.bed.gz.tbi | 24.37 KB | 51f2c4386be1a4d8825e324136529d06 |
| ENCFF743JJF.tabix.bed.gz.tbi.dvc | 109.0 B | 0a8eda6de221355c8a2094112ab04bca |
| genomic_resource.yaml | 5.48 KB | 574beb92e37e108566f2f6e8cc72d325 |
| genomic_resource_original.yaml | 5.32 KB | 3d6316fd3bfcf21e2af691c279057699 |
| statistics/ |