TF_ChIP-seq_ENCSR548DDS
TF_ChIP-seq ENCSR548DDS [biosample_summary="Homo sapiens ovary tissue female adult (51 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR548DDS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR548DDS [biosamplesummary="Homo sapiens ovary tissue female adult (51 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN795GTQ|/analyses/ENCAN795GTQ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF725LQV|/files/ENCFF725LQV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF725LQV|/files/ENCFF725LQV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.48. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR548DDS | float |
TF_ChIP-seq_ENCSR548DDS |
TF_ChIP-seq ENCSR548DDS [biosample_summary="Homo sapiens ovary tissue female adult (51 years)" and target="CTCF"]
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[8.63, 1.45e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF522DLJ.bed.gz | 421.48 KB | ef4b643af033d691d0255659c1e4f1b0 |
| ENCFF522DLJ.bed.gz.dvc | 100.0 B | 8655ae15e82131df10b1ce3f5f91ed6f |
| ENCFF522DLJ.tabix.bed.gz | 304.51 KB | b73c15e47ccc98d575231c2857493a62 |
| ENCFF522DLJ.tabix.bed.gz.dvc | 106.0 B | 8a4c5c3411796bd93ccc6ea47c5856fc |
| ENCFF522DLJ.tabix.bed.gz.tbi | 167.9 KB | b673b0939ba62b2699530ad45a873953 |
| ENCFF522DLJ.tabix.bed.gz.tbi.dvc | 110.0 B | ff6b147fb4d5522e2f6c829395ca974f |
| genomic_resource.yaml | 2.72 KB | 0b46bae31c244b267ee4c5ee8088f5a3 |
| genomic_resource_original.yaml | 2.6 KB | d211239e5b5632f32c64c45f4fd2c500 |
| statistics/ |