TF_ChIP-seq_ENCSR547LKC
TF_ChIP-seq ENCSR547LKC [biosample_summary="Homo sapiens K562" and target="GATAD2B"]
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| Id: | TF_ChIP-seq/ENCSR547LKC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR547LKC [biosamplesummary="Homo sapiens K562" and target="GATAD2B"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN326BOH|/analyses/ENCAN326BOH/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF569CMJ|/files/ENCFF569CMJ/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF918JWJ|/files/ENCFF918JWJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF918JWJ|/files/ENCFF918JWJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.84. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF580EBG|/files/ENCFF580EBG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF580EBG|/files/ENCFF580EBG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.62. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF569CMJ|/files/ENCFF569CMJ/}, {ENCFF334TMJ|/files/ENCFF334TMJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.52 and a self consistency ratio of 2.28. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF143LIN|/files/ENCFF143LIN/}, {ENCFF728KQG|/files/ENCFF728KQG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.52 and a self consistency ratio of 2.28. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR547LKC | float |
TF_ChIP-seq_ENCSR547LKC |
TF_ChIP-seq ENCSR547LKC [biosample_summary="Homo sapiens K562" and target="GATAD2B"]
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[16, 1.4e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF569CMJ.bed.gz | 254.44 KB | 9e55a5f7b19f75666b38def9aef21a8e |
| ENCFF569CMJ.bed.gz.dvc | 100.0 B | 027919ada81ab9be1efc71527ad2ab24 |
| ENCFF569CMJ.tabix.bed.gz | 176.19 KB | 6f747f99a647e45d3505f2b1dad832f4 |
| ENCFF569CMJ.tabix.bed.gz.dvc | 106.0 B | 0f426fee9c78f2214b6ce0e783c457ba |
| ENCFF569CMJ.tabix.bed.gz.tbi | 93.45 KB | 80ab3dcbcfdf12feca25c0359d4b6112 |
| ENCFF569CMJ.tabix.bed.gz.tbi.dvc | 109.0 B | 207f69d5dfd75c9f9aaf6ef5b90869e6 |
| genomic_resource.yaml | 5.27 KB | 679d7d699a2a1390847861313de8fd67 |
| genomic_resource_original.yaml | 5.17 KB | e2730fc2e0f0969be925244cac18c265 |
| statistics/ |