TF_ChIP-seq_ENCSR545ADB
TF_ChIP-seq ENCSR545ADB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NACC2" and target="NACC2"]
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| Id: | TF_ChIP-seq/ENCSR545ADB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR545ADB [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NACC2" and target="NACC2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens NACC2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN327MMW|/analyses/ENCAN327MMW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF009SSO|/files/ENCFF009SSO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF009SSO|/files/ENCFF009SSO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.23. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR545ADB | float |
TF_ChIP-seq_ENCSR545ADB |
TF_ChIP-seq ENCSR545ADB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NACC2" and target="NACC2"]
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[10.5, 581] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF551WCN.bed.gz | 324.86 KB | 7216685cd5a873b75537186195f8966a |
| ENCFF551WCN.bed.gz.dvc | 100.0 B | 191db0ccadd534b7a30014aa2c018afa |
| ENCFF551WCN.tabix.bed.gz | 246.26 KB | d547376ad8627d275e647908e8519f97 |
| ENCFF551WCN.tabix.bed.gz.dvc | 106.0 B | d9392a8b9ad513c703df677f785d9a41 |
| ENCFF551WCN.tabix.bed.gz.tbi | 104.91 KB | 928e68e5e17e7689f1423f7de4516adb |
| ENCFF551WCN.tabix.bed.gz.tbi.dvc | 110.0 B | c41480844fc615c12788d9dbee317153 |
| genomic_resource.yaml | 2.96 KB | 987bbfeb81cd0577e6a1e79de6f6d8df |
| genomic_resource_original.yaml | 2.8 KB | e303cb53065797ad397ed651cacbcba6 |
| statistics/ |