TF_ChIP-seq_ENCSR544MTJ
TF_ChIP-seq ENCSR544MTJ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THAP8" and target="THAP8"]
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| Id: | TF_ChIP-seq/ENCSR544MTJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR544MTJ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THAP8" and target="THAP8"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens THAP8 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN931SFB|/analyses/ENCAN931SFB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN931SFB|/analyses/ENCAN931SFB/} has in progress subobject document {a86849dc-7490-4ea6-ab64-257af34c4c11|/documents/a86849dc-7490-4ea6-ab64-257af34c4c11/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF721HRV|/files/ENCFF721HRV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF721HRV|/files/ENCFF721HRV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.76. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF580OCC|/files/ENCFF580OCC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF580OCC|/files/ENCFF580OCC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.67. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF723WCO|/files/ENCFF723WCO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.72 and a self consistency ratio of 3.85. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF926AYJ|/files/ENCFF926AYJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.72 and a self consistency ratio of 3.85. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR544MTJ | float |
TF_ChIP-seq_ENCSR544MTJ |
TF_ChIP-seq ENCSR544MTJ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THAP8" and target="THAP8"]
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[9.46, 737] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF723WCO.bed.gz | 112.5 KB | dfd30af7a25728c2361a3a36204be0d0 |
| ENCFF723WCO.bed.gz.dvc | 100.0 B | 07673c1c092607e3f6792dfdca72a5a3 |
| ENCFF723WCO.tabix.bed.gz | 84.28 KB | f46d156a0de0e202cefd54d89846ff60 |
| ENCFF723WCO.tabix.bed.gz.dvc | 105.0 B | 9f378c3ae449953bc17dc9235c249e31 |
| ENCFF723WCO.tabix.bed.gz.tbi | 45.74 KB | 16855a9d74ab5feb202982b49dcb3fa1 |
| ENCFF723WCO.tabix.bed.gz.tbi.dvc | 109.0 B | fceb021a91d7736a13087551c4606fc6 |
| genomic_resource.yaml | 5.49 KB | 40e4cca6466d046f5683ca904dfe712d |
| genomic_resource_original.yaml | 5.32 KB | ea8702c9137df184e1dae4cd48343e81 |
| statistics/ |