TF_ChIP-seq_ENCSR543SBE
TF_ChIP-seq ENCSR543SBE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFE2L1" and target="NFE2L1"]
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| Id: | TF_ChIP-seq/ENCSR543SBE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR543SBE [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFE2L1" and target="NFE2L1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens NFE2L1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN259FLQ|/analyses/ENCAN259FLQ/} has in progress subobject document {3e25e0df-e6a9-48e8-9b96-f3aaa15f4001|/documents/3e25e0df-e6a9-48e8-9b96-f3aaa15f4001/} audit_internal_action: Released analysis {ENCAN259FLQ|/analyses/ENCAN259FLQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF016ZFJ|/files/ENCFF016ZFJ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF016ZFJ|/files/ENCFF016ZFJ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.18. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF930BTN|/files/ENCFF930BTN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF930BTN|/files/ENCFF930BTN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.50. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF620OUT|/files/ENCFF620OUT/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.57 and a self consistency ratio of 5.21. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF220RKA|/files/ENCFF220RKA/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.57 and a self consistency ratio of 5.21. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR543SBE | float |
TF_ChIP-seq_ENCSR543SBE |
TF_ChIP-seq ENCSR543SBE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFE2L1" and target="NFE2L1"]
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[10.3, 657] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF620OUT.bed.gz | 76.74 KB | fe090ae4a696ce70cc3f9d9f118de21a |
| ENCFF620OUT.bed.gz.dvc | 99.0 B | 1bdb45797b32cfa0b3fbe89dcbb357ae |
| ENCFF620OUT.tabix.bed.gz | 55.35 KB | 5ac45d527a7a38ed3fe8df72d8ce6e84 |
| ENCFF620OUT.tabix.bed.gz.dvc | 105.0 B | 2e43647c99d56b9f8d7222dadd533c7d |
| ENCFF620OUT.tabix.bed.gz.tbi | 35.25 KB | d8bab1d37bdb8d4a99b6641b3a62b99c |
| ENCFF620OUT.tabix.bed.gz.tbi.dvc | 109.0 B | 2f043931ebed685e028e467c97f5d017 |
| genomic_resource.yaml | 5.49 KB | 3d645c463f4e59a949914ad8baab005d |
| genomic_resource_original.yaml | 5.33 KB | 122abcba804bc6c44fe50f20a2554106 |
| statistics/ |