TF_ChIP-seq_ENCSR532EMP
TF_ChIP-seq ENCSR532EMP [biosample_summary="Homo sapiens K562 stably expressing ZNF740" and target="ZNF740"]
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| Id: | TF_ChIP-seq/ENCSR532EMP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR532EMP [biosamplesummary="Homo sapiens K562 stably expressing ZNF740" and target="ZNF740"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: stably expressing C-terminal eGFP-tagged ZNF740 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN592QFK|/analyses/ENCAN592QFK/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN592QFK|/analyses/ENCAN592QFK/} has in progress subobject document {82ec0478-b0f0-4612-8d10-3a51886593cb|/documents/82ec0478-b0f0-4612-8d10-3a51886593cb/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF302LRV|/files/ENCFF302LRV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF302LRV|/files/ENCFF302LRV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.52. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR532EMP | float |
TF_ChIP-seq_ENCSR532EMP |
TF_ChIP-seq ENCSR532EMP [biosample_summary="Homo sapiens K562 stably expressing ZNF740" and target="ZNF740"]
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[18.8, 1.18e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF004YCK.bed.gz | 96.17 KB | 497df1f2ac495c3f52ca80c5aca3f257 |
| ENCFF004YCK.bed.gz.dvc | 99.0 B | 31c4f035c13cd79f43e5cdb4512477a2 |
| ENCFF004YCK.tabix.bed.gz | 70.25 KB | 8f728f332e749f3d7bd89ead9db18af4 |
| ENCFF004YCK.tabix.bed.gz.dvc | 105.0 B | ade3662988b417117b1a1123e3402b47 |
| ENCFF004YCK.tabix.bed.gz.tbi | 37.61 KB | 1c823fda3ce82254d0dece16b9a38e33 |
| ENCFF004YCK.tabix.bed.gz.tbi.dvc | 109.0 B | 715340a1bff0d7251d9774f5f25d08de |
| genomic_resource.yaml | 2.97 KB | a67372142e27bdb0a992fbb25cce0758 |
| genomic_resource_original.yaml | 2.85 KB | fd1738795f5a53127416da3eed9724a5 |
| statistics/ |