TF_ChIP-seq_ENCSR530WIV
TF_ChIP-seq ENCSR530WIV [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP1" and target="FOXP1"]
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| Id: | TF_ChIP-seq/ENCSR530WIV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR530WIV [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP1" and target="FOXP1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens FOXP1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN468TMQ|/analyses/ENCAN468TMQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF073IMU|/files/ENCFF073IMU/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF073IMU|/files/ENCFF073IMU/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.99. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF623IVK|/files/ENCFF623IVK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF623IVK|/files/ENCFF623IVK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.13. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR530WIV | float |
TF_ChIP-seq_ENCSR530WIV |
TF_ChIP-seq ENCSR530WIV [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP1" and target="FOXP1"]
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[11.3, 466] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF491EEI.bed.gz | 226.12 KB | ca54959be0f42ca980fc94a5fb2e10ff |
| ENCFF491EEI.bed.gz.dvc | 100.0 B | 16b23c7d666a246dcc85483a3e8cbe85 |
| ENCFF491EEI.tabix.bed.gz | 175.87 KB | c02f0e9f3a1f030594f476cddbd63746 |
| ENCFF491EEI.tabix.bed.gz.dvc | 106.0 B | 1eb3bb7a70ada764f2dbf6df17939dc6 |
| ENCFF491EEI.tabix.bed.gz.tbi | 76.8 KB | 6da8b623bcc7cddeef76a4cda30b26fb |
| ENCFF491EEI.tabix.bed.gz.tbi.dvc | 109.0 B | 9ab06c7558c3a466061855b5431e45b6 |
| genomic_resource.yaml | 4.23 KB | aaca1f78e9d34e4a921d3695f88b1689 |
| genomic_resource_original.yaml | 4.07 KB | f8768e59e65100c4798c7b10cb507f4f |
| statistics/ |