TF_ChIP-seq_ENCSR525VAT
TF_ChIP-seq ENCSR525VAT [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens JUNB" and target="JUNB"]
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| Id: | TF_ChIP-seq/ENCSR525VAT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR525VAT [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens JUNB" and target="JUNB"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens JUNB output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN990PUP|/analyses/ENCAN990PUP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN990PUP|/analyses/ENCAN990PUP/} has in progress subobject document {3ef9dd20-0e6a-4da8-99ba-e003acdd9459|/documents/3ef9dd20-0e6a-4da8-99ba-e003acdd9459/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF036YSX|/files/ENCFF036YSX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF036YSX|/files/ENCFF036YSX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.39. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR525VAT | float |
TF_ChIP-seq_ENCSR525VAT |
TF_ChIP-seq ENCSR525VAT [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens JUNB" and target="JUNB"]
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[14.3, 1.28e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF932KRN.bed.gz | 77.67 KB | 310e381a0dab057852b535555c595871 |
| ENCFF932KRN.bed.gz.dvc | 99.0 B | 4e8add57c2abaea680c377db91ce9d42 |
| ENCFF932KRN.tabix.bed.gz | 50.72 KB | 43a64d9ec4ba3c697b6e0f2594153ee9 |
| ENCFF932KRN.tabix.bed.gz.dvc | 105.0 B | 3cdab161e3ea13415fd7163c64f7af4f |
| ENCFF932KRN.tabix.bed.gz.tbi | 42.24 KB | fe64a0eb01eb4b777b3a2e43327cc6b6 |
| ENCFF932KRN.tabix.bed.gz.tbi.dvc | 109.0 B | 4e44d6888edd778121b83d56b3227324 |
| genomic_resource.yaml | 3.18 KB | e3dc28192f60494ccd32236f3a9702a6 |
| genomic_resource_original.yaml | 3.02 KB | 01385a401dc478f2f42d0a89f37b1fe0 |
| statistics/ |