TF_ChIP-seq_ENCSR519QYU
TF_ChIP-seq ENCSR519QYU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF101" and target="ZNF101"]
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| Id: | TF_ChIP-seq/ENCSR519QYU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR519QYU [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF101" and target="ZNF101"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF101 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN870JCF|/analyses/ENCAN870JCF/} has in progress subobject document {b3b73ed2-d2b8-445a-8197-fcd645dcbcc1|/documents/b3b73ed2-d2b8-445a-8197-fcd645dcbcc1/} audit_internal_action: Released analysis {ENCAN870JCF|/analyses/ENCAN870JCF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF690SWD|/files/ENCFF690SWD/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 19250238 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF101-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF575RTZ|/files/ENCFF575RTZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF575RTZ|/files/ENCFF575RTZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.71. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF690SWD|/files/ENCFF690SWD/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF690SWD|/files/ENCFF690SWD/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.95. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF373KUZ|/files/ENCFF373KUZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.66 and a self consistency ratio of 4.95. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF152QRL|/files/ENCFF152QRL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.66 and a self consistency ratio of 4.95. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR519QYU | float |
TF_ChIP-seq_ENCSR519QYU |
TF_ChIP-seq ENCSR519QYU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF101" and target="ZNF101"]
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[7.85, 291] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF373KUZ.bed.gz | 73.45 KB | 1fe7b5593b57ee8ed903a25eeb4f9db4 |
| ENCFF373KUZ.bed.gz.dvc | 99.0 B | eccd16dcce352f5997a89c1318de5f8d |
| ENCFF373KUZ.tabix.bed.gz | 55.35 KB | 2b473ee6dffa84eca5766e2801ba8b7e |
| ENCFF373KUZ.tabix.bed.gz.dvc | 105.0 B | 01ace043854a3d3e788783d5353d7301 |
| ENCFF373KUZ.tabix.bed.gz.tbi | 33.33 KB | 93321adb52b9375ddbd806d48eccf830 |
| ENCFF373KUZ.tabix.bed.gz.tbi.dvc | 109.0 B | f57be84e72ace1de13ff1b16a075f1b3 |
| genomic_resource.yaml | 5.98 KB | 67a3e0ad11de5290e31bb0a2879c7538 |
| genomic_resource_original.yaml | 5.81 KB | e3b9cdffc5d0bcf63492b5556cab015c |
| statistics/ |