TF_ChIP-seq_ENCSR517HGZ
TF_ChIP-seq ENCSR517HGZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF781" and target="ZNF781"]
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| Id: | TF_ChIP-seq/ENCSR517HGZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR517HGZ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF781" and target="ZNF781"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF781 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN757AYP|/analyses/ENCAN757AYP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN757AYP|/analyses/ENCAN757AYP/} has in progress subobject document {a91bb803-1ce7-4676-b269-482757b21f44|/documents/a91bb803-1ce7-4676-b269-482757b21f44/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF860SPK|/files/ENCFF860SPK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF860SPK|/files/ENCFF860SPK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.25. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF938NFM|/files/ENCFF938NFM/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF938NFM|/files/ENCFF938NFM/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.31. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF482XKY|/files/ENCFF482XKY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.34 and a self consistency ratio of 3.21. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF209OTE|/files/ENCFF209OTE/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.34 and a self consistency ratio of 3.21. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR517HGZ | float |
TF_ChIP-seq_ENCSR517HGZ |
TF_ChIP-seq ENCSR517HGZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF781" and target="ZNF781"]
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[12.1, 620] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF482XKY.bed.gz | 226.96 KB | f6e5988e9a080ccce7338032f2864410 |
| ENCFF482XKY.bed.gz.dvc | 100.0 B | fbf8696bc76bf5bfe0ba9fcabff0bbcc |
| ENCFF482XKY.tabix.bed.gz | 177.22 KB | 2a69b71c28c44ab7d2895a5119e61172 |
| ENCFF482XKY.tabix.bed.gz.dvc | 106.0 B | 1db1fc0fef67bbd78b8ea4ca49161ce2 |
| ENCFF482XKY.tabix.bed.gz.tbi | 80.63 KB | 7d2b948d7e5448c44939d351cb14f92c |
| ENCFF482XKY.tabix.bed.gz.tbi.dvc | 109.0 B | 388ecf821c93f061dfb39baf0d7330b3 |
| genomic_resource.yaml | 5.49 KB | 28d5b78386da6113a8a8603dae763680 |
| genomic_resource_original.yaml | 5.33 KB | d44a116329036b38a25e69b155429289 |
| statistics/ |