TF_ChIP-seq_ENCSR517FVL
TF_ChIP-seq ENCSR517FVL [biosample_summary="Homo sapiens body of pancreas tissue male adult (54 years)" and target="POLR2A"]
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| Id: | TF_ChIP-seq/ENCSR517FVL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR517FVL [biosamplesummary="Homo sapiens body of pancreas tissue male adult (54 years)" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: File {ENCFF389ULP|/files/ENCFF389ULP/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN305MHO|/analyses/ENCAN305MHO/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF888CAT|/files/ENCFF888CAT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF888CAT|/files/ENCFF888CAT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.52. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR517FVL | float |
TF_ChIP-seq_ENCSR517FVL |
TF_ChIP-seq ENCSR517FVL [biosample_summary="Homo sapiens body of pancreas tissue male adult (54 years)" and target="POLR2A"]
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[9.99, 2.29e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF389ULP.bed.gz | 626.37 KB | 3b417006cf538a3d1d9dd4d049b06104 |
| ENCFF389ULP.bed.gz.dvc | 100.0 B | dba60400ef38c034e94002808ddf605b |
| ENCFF389ULP.tabix.bed.gz | 398.64 KB | 484c7f8d8241330957f9a39fd103883e |
| ENCFF389ULP.tabix.bed.gz.dvc | 106.0 B | fa1d7aa0d696d68224e5ed45bbd23f73 |
| ENCFF389ULP.tabix.bed.gz.tbi | 153.49 KB | 617acd8c1935579f68a7e73fc3b195de |
| ENCFF389ULP.tabix.bed.gz.tbi.dvc | 110.0 B | 99330e92840c9c785c25712561cfc031 |
| genomic_resource.yaml | 2.94 KB | 6de78ac96d6cdf0f2a2507a0f7d1bd95 |
| genomic_resource_original.yaml | 2.81 KB | d462eb725152b8e8adcfbc6e5d1541f1 |
| statistics/ |