| Id: | TF_ChIP-seq/ENCSR516VQK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR516VQK [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF174" and target="ZNF174"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF174 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN206MOT|/analyses/ENCAN206MOT/} has in progress subobject document {a2274105-446c-4dde-a5ee-f7b7bafebdb2|/documents/a2274105-446c-4dde-a5ee-f7b7bafebdb2/} audit_internal_action: Released analysis {ENCAN206MOT|/analyses/ENCAN206MOT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF615TLZ|/files/ENCFF615TLZ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF615TLZ|/files/ENCFF615TLZ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.87. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF274VMM|/files/ENCFF274VMM/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF274VMM|/files/ENCFF274VMM/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.97. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR516VQK | float |
TF_ChIP-seq_ENCSR516VQK |
TF_ChIP-seq ENCSR516VQK [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF174" and target="ZNF174"]
|
 |
[20.2, 548] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF743TLK.bed.gz | 14.31 KB | ca04bd85fe55472816ae8cc5ba9bc1a4 |
| ENCFF743TLK.bed.gz.dvc | 99.0 B | 41183f0c1d5f45925637a31ed81812a2 |
| ENCFF743TLK.tabix.bed.gz | 9.24 KB | 228a8d81b2fcd6cfa7fc192d3d1968c4 |
| ENCFF743TLK.tabix.bed.gz.dvc | 104.0 B | 6f898da46f8b9527b8441b88ff227234 |
| ENCFF743TLK.tabix.bed.gz.tbi | 11.63 KB | 792bbaa885e01343d40efb1a05ada9aa |
| ENCFF743TLK.tabix.bed.gz.tbi.dvc | 109.0 B | 65a2e60b5802e83e9274e915bcc873a6 |
| genomic_resource.yaml | 4.56 KB | f0806151d067c6fb81a86ca4a3d78f42 |
| genomic_resource_original.yaml | 4.37 KB | 23de0c6eae7df9232680c53ddfa2710a |
| statistics/ |