TF_ChIP-seq_ENCSR516SWI
TF_ChIP-seq ENCSR516SWI [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR2C2" and target="NR2C2"]
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| Id: | TF_ChIP-seq/ENCSR516SWI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR516SWI [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR2C2" and target="NR2C2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens NR2C2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN551ZHI|/analyses/ENCAN551ZHI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF372LDG|/files/ENCFF372LDG/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF372LDG|/files/ENCFF372LDG/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.56. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF834NVD|/files/ENCFF834NVD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF834NVD|/files/ENCFF834NVD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.58. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR516SWI | float |
TF_ChIP-seq_ENCSR516SWI |
TF_ChIP-seq ENCSR516SWI [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR2C2" and target="NR2C2"]
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[10.2, 844] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF946CTR.bed.gz | 177.8 KB | 172dc18808518597204fb4184259ef1d |
| ENCFF946CTR.bed.gz.dvc | 100.0 B | e942c37159a18c92e99d7201ee28f357 |
| ENCFF946CTR.tabix.bed.gz | 128.62 KB | 455b42b1ad03894017e9239fe0720ba0 |
| ENCFF946CTR.tabix.bed.gz.dvc | 106.0 B | a7d27c3a596049cf6c41c677ccd36f29 |
| ENCFF946CTR.tabix.bed.gz.tbi | 68.85 KB | adbcfcab36753c364dfc4d256284656a |
| ENCFF946CTR.tabix.bed.gz.tbi.dvc | 109.0 B | f56253872c7d5b8f906e0a90329405f9 |
| genomic_resource.yaml | 4.23 KB | 0331c39abad99484b6f62fdac7df9367 |
| genomic_resource_original.yaml | 4.07 KB | 65e3e8d841673b4df70cded1f18546f0 |
| statistics/ |