TF_ChIP-seq_ENCSR516SMM
TF_ChIP-seq ENCSR516SMM [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SRF" and target="SRF"]
×
| Id: | TF_ChIP-seq/ENCSR516SMM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR516SMM [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SRF" and target="SRF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SRF output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN213WUR|/analyses/ENCAN213WUR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF577LLU|/files/ENCFF577LLU/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF577LLU|/files/ENCFF577LLU/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.99. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF873BTF|/files/ENCFF873BTF/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF873BTF|/files/ENCFF873BTF/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.24. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR516SMM | float |
TF_ChIP-seq_ENCSR516SMM |
TF_ChIP-seq ENCSR516SMM [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SRF" and target="SRF"]
|
|
[9.25, 840] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF316WFA.bed.gz | 256.9 KB | 1bcee10630c6135bb6c4a998790461f7 |
| ENCFF316WFA.bed.gz.dvc | 100.0 B | 56bec07d8176817ad64817ea5c3fa9ad |
| ENCFF316WFA.tabix.bed.gz | 203.0 KB | 293a0634c148937e247861e5b6f659db |
| ENCFF316WFA.tabix.bed.gz.dvc | 106.0 B | cc5cdbfbe8be3dc2521c18acb4632709 |
| ENCFF316WFA.tabix.bed.gz.tbi | 87.2 KB | 286e1a31572948dba05216012f73b5a8 |
| ENCFF316WFA.tabix.bed.gz.tbi.dvc | 109.0 B | 2166a98c4fc3f171a3288ff41aa73d71 |
| genomic_resource.yaml | 4.21 KB | 8a7dc1d1515b0ff79f907dd469db4393 |
| genomic_resource_original.yaml | 4.06 KB | e22042296efea7213c480303a52ac39e |
| statistics/ |