TF_ChIP-seq_ENCSR516DDO
TF_ChIP-seq ENCSR516DDO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF7" and target="ATF7"]
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| Id: | TF_ChIP-seq/ENCSR516DDO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR516DDO [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF7" and target="ATF7"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ATF7 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN656GFY|/analyses/ENCAN656GFY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN656GFY|/analyses/ENCAN656GFY/} has in progress subobject document {9efbebc4-91b0-4a61-9203-9b482e38380d|/documents/9efbebc4-91b0-4a61-9203-9b482e38380d/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF093FKL|/files/ENCFF093FKL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF093FKL|/files/ENCFF093FKL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.02. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF206UGF|/files/ENCFF206UGF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF206UGF|/files/ENCFF206UGF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR516DDO | float |
TF_ChIP-seq_ENCSR516DDO |
TF_ChIP-seq ENCSR516DDO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF7" and target="ATF7"]
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[11.2, 380] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF894YFW.bed.gz | 191.47 KB | 13f00ba37870f021cca2b7c571d0107d |
| ENCFF894YFW.bed.gz.dvc | 100.0 B | 33df313a5a7fda7490fd5f3d61631915 |
| ENCFF894YFW.tabix.bed.gz | 147.34 KB | 1c6b5b174ec1332f7d178dcf97b72d97 |
| ENCFF894YFW.tabix.bed.gz.dvc | 106.0 B | 312b7b878ede7e5e53e995b695b6874c |
| ENCFF894YFW.tabix.bed.gz.tbi | 73.7 KB | 280a4435e1a47cdaa6e4219c245a7bf0 |
| ENCFF894YFW.tabix.bed.gz.tbi.dvc | 109.0 B | b88b0171784cec7e4575a75a9762e913 |
| genomic_resource.yaml | 4.43 KB | c92232778537a06bbfe0b314436b1eed |
| genomic_resource_original.yaml | 4.27 KB | 0df43ae0049585ab78e37af4e2b2d7dd |
| statistics/ |