TF_ChIP-seq_ENCSR514VYD
TF_ChIP-seq ENCSR514VYD [biosample_summary="Homo sapiens GM12878" and target="NR2F1"]
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| Id: | TF_ChIP-seq/ENCSR514VYD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR514VYD [biosamplesummary="Homo sapiens GM12878" and target="NR2F1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN923LWU|/analyses/ENCAN923LWU/} has in progress subobject document {a4d970a8-7ed2-490e-ba1f-3469f6a7499b|/documents/a4d970a8-7ed2-490e-ba1f-3469f6a7499b/} audit_internal_action: Released analysis {ENCAN923LWU|/analyses/ENCAN923LWU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF534AXH|/files/ENCFF534AXH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF534AXH|/files/ENCFF534AXH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 4.83. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF677LIC|/files/ENCFF677LIC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF677LIC|/files/ENCFF677LIC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.95. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR514VYD | float |
TF_ChIP-seq_ENCSR514VYD |
TF_ChIP-seq ENCSR514VYD [biosample_summary="Homo sapiens GM12878" and target="NR2F1"]
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[11.6, 7.42e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF118UKC.bed.gz | 733.87 KB | c49702fa31f06f27bdcdbf806a514f7d |
| ENCFF118UKC.bed.gz.dvc | 100.0 B | b08312e7aa760c6f737c98c6f1e2eefe |
| ENCFF118UKC.tabix.bed.gz | 505.88 KB | d93e2c2e99d93304d40b34b465ea9a98 |
| ENCFF118UKC.tabix.bed.gz.dvc | 106.0 B | f3fffdb73b4dc7f247db9dbc3f48de18 |
| ENCFF118UKC.tabix.bed.gz.tbi | 194.65 KB | c6d9b65aaf2ec777e9d4922cdb178f23 |
| ENCFF118UKC.tabix.bed.gz.tbi.dvc | 110.0 B | d7584cd8fd1c72100fca3d396b16b980 |
| genomic_resource.yaml | 4.2 KB | 49b41ae61e1cf1432d697f839c766e1c |
| genomic_resource_original.yaml | 4.11 KB | 243dbd3ba211834d2a47d524d6111ecb |
| statistics/ |