TF_ChIP-seq_ENCSR514RAH
TF_ChIP-seq ENCSR514RAH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RARG" and target="RARG"]
×
| Id: | TF_ChIP-seq/ENCSR514RAH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR514RAH [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RARG" and target="RARG"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens RARG output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN119LEO|/analyses/ENCAN119LEO/} has in progress subobject document {21f3f797-1d5f-4657-a8bb-db816ee8e20f|/documents/21f3f797-1d5f-4657-a8bb-db816ee8e20f/} audit_internal_action: Released analysis {ENCAN119LEO|/analyses/ENCAN119LEO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF817IYI|/files/ENCFF817IYI/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 18595234 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting RARG-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF019XXY|/files/ENCFF019XXY/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 18756565 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting RARG-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF817IYI|/files/ENCFF817IYI/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF817IYI|/files/ENCFF817IYI/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.53. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF019XXY|/files/ENCFF019XXY/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF019XXY|/files/ENCFF019XXY/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.18. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR514RAH | float |
TF_ChIP-seq_ENCSR514RAH |
TF_ChIP-seq ENCSR514RAH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RARG" and target="RARG"]
|
|
[8.42, 360] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF909XQR.bed.gz | 76.2 KB | 00b11cb510da836728026ec69bac9b44 |
| ENCFF909XQR.bed.gz.dvc | 99.0 B | 419d3d447f616619155e4c4a74a834fd |
| ENCFF909XQR.tabix.bed.gz | 60.48 KB | 1462030074bfeab6364c907cfc7c1728 |
| ENCFF909XQR.tabix.bed.gz.dvc | 105.0 B | 711540fc8ddf4bf962faecef7f2b7284 |
| ENCFF909XQR.tabix.bed.gz.tbi | 32.48 KB | 468946c1999bdbe5ae01d7ecf891abb1 |
| ENCFF909XQR.tabix.bed.gz.tbi.dvc | 109.0 B | e207c9feb0df88955d87ac7427a3b65e |
| genomic_resource.yaml | 5.4 KB | 7bb737850d74356d1d5d8045291f30c8 |
| genomic_resource_original.yaml | 5.24 KB | 45ddf20ae6ad33d49dfe77e2c774406c |
| statistics/ |