TF_ChIP-seq_ENCSR513XQX
TF_ChIP-seq ENCSR513XQX [biosample_summary="Homo sapiens A549" and target="SIN3A"]
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| Id: | TF_ChIP-seq/ENCSR513XQX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR513XQX [biosamplesummary="Homo sapiens A549" and target="SIN3A"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN235MGJ|/analyses/ENCAN235MGJ/} has in progress subobject document {a068abd0-3c29-45c5-bf52-b02a637ab4b4|/documents/a068abd0-3c29-45c5-bf52-b02a637ab4b4/} audit_internal_action: Released analysis {ENCAN235MGJ|/analyses/ENCAN235MGJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF818AAA|/files/ENCFF818AAA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF818AAA|/files/ENCFF818AAA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.43. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR513XQX | float |
TF_ChIP-seq_ENCSR513XQX |
TF_ChIP-seq ENCSR513XQX [biosample_summary="Homo sapiens A549" and target="SIN3A"]
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[11.4, 3.17e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF639RSC.bed.gz | 734.07 KB | c8e3cd6548e19b6de13606ace05c7a63 |
| ENCFF639RSC.bed.gz.dvc | 100.0 B | 58abf35f428389c62cc38dff9d3b6ee5 |
| ENCFF639RSC.tabix.bed.gz | 483.44 KB | 2a0da8d2ce1e24b4ca115450f29b012c |
| ENCFF639RSC.tabix.bed.gz.dvc | 106.0 B | ca53d297c6d12c4bcb36abc1ab5a0737 |
| ENCFF639RSC.tabix.bed.gz.tbi | 158.63 KB | 2cdc12d38f894be2fcbbfbfa2754e838 |
| ENCFF639RSC.tabix.bed.gz.tbi.dvc | 110.0 B | 961ce1f5e0c7c5011ef6b19472d333bb |
| genomic_resource.yaml | 2.88 KB | 6fc6e5d6ad6ca8abe26fb50bb407d446 |
| genomic_resource_original.yaml | 2.79 KB | ca65d86ca50a0cfc158f3e8bc68e635a |
| statistics/ |