TF_ChIP-seq_ENCSR513UQG
TF_ChIP-seq ENCSR513UQG [biosample_summary="Homo sapiens IMR-90" and target="USF2"]
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| Id: | TF_ChIP-seq/ENCSR513UQG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR513UQG [biosamplesummary="Homo sapiens IMR-90" and target="USF2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN548DTZ|/analyses/ENCAN548DTZ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF938BOJ|/files/ENCFF938BOJ/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF144SKI|/files/ENCFF144SKI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18207387 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting USF2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF144SKI|/files/ENCFF144SKI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF144SKI|/files/ENCFF144SKI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.83. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR513UQG | float |
TF_ChIP-seq_ENCSR513UQG |
TF_ChIP-seq ENCSR513UQG [biosample_summary="Homo sapiens IMR-90" and target="USF2"]
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[4.87, 570] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF938BOJ.bed.gz | 305.03 KB | e46bed9d8d90b944d6c99d2a22b9df2b |
| ENCFF938BOJ.bed.gz.dvc | 100.0 B | d6ec55ef736b64cf2b11a222d9e32bb6 |
| ENCFF938BOJ.tabix.bed.gz | 222.72 KB | da55f56c5f436f8b7ec3cd107f689e03 |
| ENCFF938BOJ.tabix.bed.gz.dvc | 106.0 B | b497b2818018f866a5e674838bc740b6 |
| ENCFF938BOJ.tabix.bed.gz.tbi | 136.95 KB | a2fe7fcdb8bc74859005602a5cfb1733 |
| ENCFF938BOJ.tabix.bed.gz.tbi.dvc | 110.0 B | 3cf2bd995dfdc463fefa3a87eb148337 |
| genomic_resource.yaml | 3.33 KB | f883ffbb95c0848349589f9f2c2482de |
| genomic_resource_original.yaml | 3.23 KB | 313beaf9c6b73b1243010537e5ff03d6 |
| statistics/ |