TF_ChIP-seq_ENCSR512NLO
TF_ChIP-seq ENCSR512NLO [biosample_summary="Homo sapiens K562" and target="MNT"]
×
| Id: | TF_ChIP-seq/ENCSR512NLO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR512NLO [biosamplesummary="Homo sapiens K562" and target="MNT"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF459DYU|/files/ENCFF459DYU/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN393IMQ|/analyses/ENCAN393IMQ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF767FRB|/files/ENCFF767FRB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19163458 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MNT-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF767FRB|/files/ENCFF767FRB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF767FRB|/files/ENCFF767FRB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.51. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF911BGV|/files/ENCFF911BGV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF911BGV|/files/ENCFF911BGV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.31. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR512NLO | float |
TF_ChIP-seq_ENCSR512NLO |
TF_ChIP-seq ENCSR512NLO [biosample_summary="Homo sapiens K562" and target="MNT"]
|
|
[10.6, 6.56e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF459DYU.bed.gz | 562.94 KB | 624fb737709c3ddaa02467eac3bc9eba |
| ENCFF459DYU.bed.gz.dvc | 100.0 B | d01c2f16ab1d0a57fae0c10899362cd0 |
| ENCFF459DYU.tabix.bed.gz | 406.14 KB | cf81bc19730316abbeb00fbd87581e4e |
| ENCFF459DYU.tabix.bed.gz.dvc | 106.0 B | 18adffe36c82940052d47878ec9e1ad9 |
| ENCFF459DYU.tabix.bed.gz.tbi | 153.01 KB | 611fc7d5ee362f6ba779e42e53998e77 |
| ENCFF459DYU.tabix.bed.gz.tbi.dvc | 110.0 B | 5976b9a3c2e19c7d6412075815109a5e |
| genomic_resource.yaml | 4.62 KB | 48e00eeae569c733bb59f05b5da1c785 |
| genomic_resource_original.yaml | 4.52 KB | e675e7bbb22243c3ba48f3a0e1cc21df |
| statistics/ |