TF_ChIP-seq_ENCSR510GKB
TF_ChIP-seq ENCSR510GKB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF770" and target="ZNF770"]
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| Id: | TF_ChIP-seq/ENCSR510GKB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR510GKB [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF770" and target="ZNF770"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF770 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN569LII|/analyses/ENCAN569LII/} has in progress subobject document {786fd467-c07a-4939-896f-8e83f673db6a|/documents/786fd467-c07a-4939-896f-8e83f673db6a/} audit_internal_action: Released analysis {ENCAN569LII|/analyses/ENCAN569LII/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF581ATI|/files/ENCFF581ATI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF581ATI|/files/ENCFF581ATI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.41. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF428KJG|/files/ENCFF428KJG/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF428KJG|/files/ENCFF428KJG/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.59. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR510GKB | float |
TF_ChIP-seq_ENCSR510GKB |
TF_ChIP-seq ENCSR510GKB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF770" and target="ZNF770"]
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[10.2, 1.03e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF514IUU.bed.gz | 781.27 KB | 80fdc0d3f510886a758b76aa6d318585 |
| ENCFF514IUU.bed.gz.dvc | 100.0 B | 916fec2ef6d1604490aad1a9adc66277 |
| ENCFF514IUU.tabix.bed.gz | 592.53 KB | 276c509dfc7c4769dc190154a90b1fbf |
| ENCFF514IUU.tabix.bed.gz.dvc | 106.0 B | 16c3241e1374b84ddda2c00066900b7e |
| ENCFF514IUU.tabix.bed.gz.tbi | 180.05 KB | 05ad9f4a9885b1e14aae94b089bb9737 |
| ENCFF514IUU.tabix.bed.gz.tbi.dvc | 110.0 B | e204b906dbfc1bfce297b2d4205e4d0d |
| genomic_resource.yaml | 4.45 KB | dc9aa93fbd0b74b0462fbe6f7a5a1798 |
| genomic_resource_original.yaml | 4.29 KB | 4ac0e858ca631aa9a49a1bdd87b1a642 |
| statistics/ |