TF_ChIP-seq_ENCSR509FWH
TF_ChIP-seq ENCSR509FWH [biosample_summary="Homo sapiens GM12878" and target="DPF2"]
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| Id: | TF_ChIP-seq/ENCSR509FWH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR509FWH [biosamplesummary="Homo sapiens GM12878" and target="DPF2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN890HYX|/analyses/ENCAN890HYX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN890HYX|/analyses/ENCAN890HYX/} has in progress subobject document {0d8274b2-45bd-4383-8491-644d5fb2b52f|/documents/0d8274b2-45bd-4383-8491-644d5fb2b52f/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF475ECM|/files/ENCFF475ECM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF475ECM|/files/ENCFF475ECM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.11. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR509FWH | float |
TF_ChIP-seq_ENCSR509FWH |
TF_ChIP-seq ENCSR509FWH [biosample_summary="Homo sapiens GM12878" and target="DPF2"]
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[12.5, 2.64e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF003ZLG.bed.gz | 793.25 KB | 592f8e412f773f490de48e776d71f787 |
| ENCFF003ZLG.bed.gz.dvc | 100.0 B | 77587dbe8021ec86bc9f42a1d4d801ea |
| ENCFF003ZLG.tabix.bed.gz | 581.52 KB | 19461a6b9a7b1bf793ac278fb853fa34 |
| ENCFF003ZLG.tabix.bed.gz.dvc | 106.0 B | ad284c808426dbb23dd39a087d61b75a |
| ENCFF003ZLG.tabix.bed.gz.tbi | 197.75 KB | d047e041a985c78a04e2dc4922e737b3 |
| ENCFF003ZLG.tabix.bed.gz.tbi.dvc | 110.0 B | 2c5ccb59a8269c72c48368192a237956 |
| genomic_resource.yaml | 2.88 KB | ce60bbbba161927a083436494ae74909 |
| genomic_resource_original.yaml | 2.78 KB | 1fd4762f0ef896d711563217506ecfea |
| statistics/ |