TF_ChIP-seq_ENCSR509DOK
TF_ChIP-seq ENCSR509DOK [biosample_summary="Homo sapiens MCF-7" and target="PPP1R10"]
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| Id: | TF_ChIP-seq/ENCSR509DOK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR509DOK [biosamplesummary="Homo sapiens MCF-7" and target="PPP1R10"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN237DIJ|/analyses/ENCAN237DIJ/} has in progress subobject document {753bc1d9-c7c9-403e-9fc5-3448d50b6cae|/documents/753bc1d9-c7c9-403e-9fc5-3448d50b6cae/} audit_internal_action: Released analysis {ENCAN237DIJ|/analyses/ENCAN237DIJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF824OIK|/files/ENCFF824OIK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF824OIK|/files/ENCFF824OIK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.47. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR509DOK | float |
TF_ChIP-seq_ENCSR509DOK |
TF_ChIP-seq ENCSR509DOK [biosample_summary="Homo sapiens MCF-7" and target="PPP1R10"]
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[16.7, 369] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF428GSG.bed.gz | 18.67 KB | 77496bdb1598734a17fea0485a72945b |
| ENCFF428GSG.bed.gz.dvc | 99.0 B | 9b134f5376bdb57745a1704250fd7327 |
| ENCFF428GSG.tabix.bed.gz | 12.35 KB | 67ff96a0120919b2c1c0aec0ba9a1b27 |
| ENCFF428GSG.tabix.bed.gz.dvc | 105.0 B | ef16f45c5bdf05681994659ffc0a6ee0 |
| ENCFF428GSG.tabix.bed.gz.tbi | 9.96 KB | d90696a89ad1a3d22a555c6f72a89f4b |
| ENCFF428GSG.tabix.bed.gz.tbi.dvc | 109.0 B | f24efbc153d3a58edc24653db317a7d6 |
| genomic_resource.yaml | 2.88 KB | 346463a70aad7cae9eca3f28df78d0a6 |
| genomic_resource_original.yaml | 2.78 KB | 830b7b623eadd0e71ae243cc36e6545e |
| statistics/ |