TF_ChIP-seq_ENCSR508DQA
TF_ChIP-seq ENCSR508DQA [biosample_summary="Homo sapiens K562" and target="FOXK2"]
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| Id: | TF_ChIP-seq/ENCSR508DQA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR508DQA [biosamplesummary="Homo sapiens K562" and target="FOXK2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN935CYI|/analyses/ENCAN935CYI/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF599UMI|/files/ENCFF599UMI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 18650511 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting FOXK2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF928REO|/files/ENCFF928REO/} processed by ChIP-seq ENCODE3 hg19 pipeline has 18183380 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting FOXK2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF599UMI|/files/ENCFF599UMI/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF599UMI|/files/ENCFF599UMI/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.10. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR508DQA | float |
TF_ChIP-seq_ENCSR508DQA |
TF_ChIP-seq ENCSR508DQA [biosample_summary="Homo sapiens K562" and target="FOXK2"]
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[30.9, 5.74e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF492GXZ.bed.gz | 359.5 KB | 78f64e4354c002e60b1ba43e77ebe73c |
| ENCFF492GXZ.bed.gz.dvc | 100.0 B | 7a251989d656c6b051c079905d03a06d |
| ENCFF492GXZ.tabix.bed.gz | 296.31 KB | 0e01bb885cd7ebe96801632a9b5044e7 |
| ENCFF492GXZ.tabix.bed.gz.dvc | 106.0 B | 6ffdd24fe4a6326a5a4b8fdddf5dd4f2 |
| ENCFF492GXZ.tabix.bed.gz.tbi | 139.54 KB | a0079fbf4b73ac4bddfffb6a44d2018d |
| ENCFF492GXZ.tabix.bed.gz.tbi.dvc | 110.0 B | 1c072182c038097ba125c707de15f101 |
| genomic_resource.yaml | 3.63 KB | 8a3fb60d6c561f8f9ed59acac7a77a81 |
| genomic_resource_original.yaml | 3.54 KB | bec2599e52d0bd6b52c14b9140d9a928 |
| statistics/ |