TF_ChIP-seq_ENCSR507RVF
TF_ChIP-seq ENCSR507RVF [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4" and target="FOXP4"]
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| Id: | TF_ChIP-seq/ENCSR507RVF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR507RVF [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4" and target="FOXP4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN407NVG|/analyses/ENCAN407NVG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF777MWC|/files/ENCFF777MWC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF777MWC|/files/ENCFF777MWC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR507RVF | float |
TF_ChIP-seq_ENCSR507RVF |
TF_ChIP-seq ENCSR507RVF [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4" and target="FOXP4"]
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[9.46, 533] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF172KCZ.bed.gz | 278.66 KB | 7649603a8f0d8d9dfda4724d3b3ee59b |
| ENCFF172KCZ.bed.gz.dvc | 100.0 B | 3087069ddcbe86f00571c1d52bbc9888 |
| ENCFF172KCZ.tabix.bed.gz | 203.97 KB | f92b1002425fe0e1fac0165199604a1b |
| ENCFF172KCZ.tabix.bed.gz.dvc | 106.0 B | b63fddb42433955bc4794ab507c7454f |
| ENCFF172KCZ.tabix.bed.gz.tbi | 111.11 KB | 23448f7ea02aa9f3661a71c1fa21b882 |
| ENCFF172KCZ.tabix.bed.gz.tbi.dvc | 110.0 B | 05a738a62c5e3a8eaf2e32ace1b70e12 |
| genomic_resource.yaml | 2.96 KB | e692880fe38236f914305586e3b74d20 |
| genomic_resource_original.yaml | 2.8 KB | f8aed2c7b1a9386f2cdd062ba4225de2 |
| statistics/ |