TF_ChIP-seq_ENCSR506KWJ
TF_ChIP-seq ENCSR506KWJ [biosample_summary="Homo sapiens K562" and target="XRCC5"]
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| Id: | TF_ChIP-seq/ENCSR506KWJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR506KWJ [biosamplesummary="Homo sapiens K562" and target="XRCC5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF929TWP|/files/ENCFF929TWP/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Released analysis {ENCAN067KOL|/analyses/ENCAN067KOL/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF991WOD|/files/ENCFF991WOD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14702631 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting XRCC5-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF232PSU|/files/ENCFF232PSU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18429831 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting XRCC5-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF991WOD|/files/ENCFF991WOD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF991WOD|/files/ENCFF991WOD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.95. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF232PSU|/files/ENCFF232PSU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF232PSU|/files/ENCFF232PSU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.21. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR506KWJ | float |
TF_ChIP-seq_ENCSR506KWJ |
TF_ChIP-seq ENCSR506KWJ [biosample_summary="Homo sapiens K562" and target="XRCC5"]
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[6.14, 217] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF929TWP.bed.gz | 219.61 KB | b68998b0e9dddfba56900d32052315d1 |
| ENCFF929TWP.bed.gz.dvc | 100.0 B | 979186da62b9d5153dc9658febe9dc17 |
| ENCFF929TWP.tabix.bed.gz | 177.1 KB | 411fd3ac04e2c13bec0a2ca16ea5216f |
| ENCFF929TWP.tabix.bed.gz.dvc | 106.0 B | c4ccebbd800f8ed0b4dea02e30a2af8a |
| ENCFF929TWP.tabix.bed.gz.tbi | 88.62 KB | c444d6c014ee593d499c5d4c954cd40c |
| ENCFF929TWP.tabix.bed.gz.tbi.dvc | 109.0 B | 13304072d48343db457b473ef896180c |
| genomic_resource.yaml | 5.12 KB | cf4854012d2d360321f03b13cc806d08 |
| genomic_resource_original.yaml | 5.03 KB | df9c74d536c7c12f24e01e9860c64289 |
| statistics/ |