TF_ChIP-seq_ENCSR505UNL
TF_ChIP-seq ENCSR505UNL [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF333" and target="ZNF333"]
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| Id: | TF_ChIP-seq/ENCSR505UNL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR505UNL [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF333" and target="ZNF333"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF333 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN369PWV|/analyses/ENCAN369PWV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN369PWV|/analyses/ENCAN369PWV/} has in progress subobject document {ed365490-b21c-4ccb-bc1d-3cb4dba37b4a|/documents/ed365490-b21c-4ccb-bc1d-3cb4dba37b4a/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF465DAK|/files/ENCFF465DAK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF465DAK|/files/ENCFF465DAK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.44. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF114NLB|/files/ENCFF114NLB/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF114NLB|/files/ENCFF114NLB/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.04. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF486PIE|/files/ENCFF486PIE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.46 and a self consistency ratio of 2.38. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF038JAL|/files/ENCFF038JAL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.46 and a self consistency ratio of 2.38. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR505UNL | float |
TF_ChIP-seq_ENCSR505UNL |
TF_ChIP-seq ENCSR505UNL [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF333" and target="ZNF333"]
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[11.5, 477] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF486PIE.bed.gz | 206.0 KB | d5d47e33942cfbfd9175733f85c93e5a |
| ENCFF486PIE.bed.gz.dvc | 100.0 B | 3f18e11d26bca5d268226dfbdc5b97ff |
| ENCFF486PIE.tabix.bed.gz | 154.76 KB | 50bec0260036bf4e372add15ef0edeb5 |
| ENCFF486PIE.tabix.bed.gz.dvc | 106.0 B | a1fe7dd6aa93a0b7fdf0f0d42ab269f7 |
| ENCFF486PIE.tabix.bed.gz.tbi | 70.5 KB | 619957863c6bb5d314020ce091aa562d |
| ENCFF486PIE.tabix.bed.gz.tbi.dvc | 109.0 B | 2a6ad21874ade02c49bb50f18d41fa96 |
| genomic_resource.yaml | 5.49 KB | 4241189a78aee314260746ea36e81082 |
| genomic_resource_original.yaml | 5.33 KB | 7554b8d8ee83b180940ffd5ea23d676c |
| statistics/ |