TF_ChIP-seq_ENCSR505ELD
TF_ChIP-seq ENCSR505ELD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NPAS2" and target="NPAS2"]
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| Id: | TF_ChIP-seq/ENCSR505ELD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR505ELD [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NPAS2" and target="NPAS2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens NPAS2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN560OKM|/analyses/ENCAN560OKM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF474BKC|/files/ENCFF474BKC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF474BKC|/files/ENCFF474BKC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.84. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF638FWX|/files/ENCFF638FWX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF638FWX|/files/ENCFF638FWX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.50. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF744HGY|/files/ENCFF744HGY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.26 and a self consistency ratio of 2.39. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR505ELD | float |
TF_ChIP-seq_ENCSR505ELD |
TF_ChIP-seq ENCSR505ELD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NPAS2" and target="NPAS2"]
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[9.82, 308] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF744HGY.bed.gz | 27.38 KB | 51af928794ff660a5f9313ff80046bad |
| ENCFF744HGY.bed.gz.dvc | 99.0 B | e743a528bfb49fd527d7ccd7afbf62d4 |
| ENCFF744HGY.tabix.bed.gz | 19.27 KB | c3366263fe236c87d167eae932b5c78d |
| ENCFF744HGY.tabix.bed.gz.dvc | 105.0 B | a1ad7c694978afa25d9af6c5adc9b734 |
| ENCFF744HGY.tabix.bed.gz.tbi | 16.93 KB | d5613e73216ca0546d18ceab16e67ab5 |
| ENCFF744HGY.tabix.bed.gz.tbi.dvc | 109.0 B | 5b34fc7725b34c53522428c590502f68 |
| genomic_resource.yaml | 4.75 KB | 5cdbe503dc109cdc6ac82d303fbc2306 |
| genomic_resource_original.yaml | 4.59 KB | 2e34cf8794093fd6a3557129564f2e42 |
| statistics/ |