TF_ChIP-seq_ENCSR505DVB
TF_ChIP-seq ENCSR505DVB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM3" and target="ZMYM3"]
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| Id: | TF_ChIP-seq/ENCSR505DVB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR505DVB [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM3" and target="ZMYM3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN897QBH|/analyses/ENCAN897QBH/} has in progress subobject document {8c871cfc-156d-432e-aad8-0e074c2b46e7|/documents/8c871cfc-156d-432e-aad8-0e074c2b46e7/} audit_internal_action: Released analysis {ENCAN897QBH|/analyses/ENCAN897QBH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF259TJH|/files/ENCFF259TJH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF259TJH|/files/ENCFF259TJH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.70. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF658BFI|/files/ENCFF658BFI/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF658BFI|/files/ENCFF658BFI/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.91. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR505DVB | float |
TF_ChIP-seq_ENCSR505DVB |
TF_ChIP-seq ENCSR505DVB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM3" and target="ZMYM3"]
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[14.8, 556] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF640TCA.bed.gz | 591.42 KB | 003443302356d62ef022b0c65e72d326 |
| ENCFF640TCA.bed.gz.dvc | 100.0 B | df45f0acc6c3c854a7a8999e79fae8c3 |
| ENCFF640TCA.tabix.bed.gz | 472.58 KB | aa3837259769cb42e724cbb6a723aca3 |
| ENCFF640TCA.tabix.bed.gz.dvc | 106.0 B | 3da065372d99116ef41ac6e61146b963 |
| ENCFF640TCA.tabix.bed.gz.tbi | 157.49 KB | 32734a77c13cc50c673a0d268ab22f2d |
| ENCFF640TCA.tabix.bed.gz.tbi.dvc | 110.0 B | 37d1209e21f459f9db6553a6d7db26dd |
| genomic_resource.yaml | 4.44 KB | d127fff6b886a6f80d9be396873f4cde |
| genomic_resource_original.yaml | 4.28 KB | 2c6b10723a6597a62d63665d0d844e7a |
| statistics/ |